24 lines
2.0 KiB
Plaintext
24 lines
2.0 KiB
Plaintext
##fileformat=VCFv4.1
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##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth (only filtered reads used for calling)">
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##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality">
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##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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##FORMAT=<ID=PL,Number=3,Type=Float,Description="Normalized, Phred-scaled likelihoods for AA,AB,BB genotypes where A=ref and B=alt; not applicable if site is not biallelic">
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##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
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##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
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##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
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##INFO=<ID=DBSNP129,Number=0,Type=Flag,Description="DBSNP129 Membership">
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##INFO=<ID=DBSNP132,Number=0,Type=Flag,Description="DBSNP132 Membership">
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##INFO=<ID=GenericAnnotation,Number=1,Type=Integer,Description="For each variant in the 'variants' ROD, finds all entries in the other -B files that overlap the variant's position.">
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##INFO=<ID=HAPMAP,Number=0,Type=Flag,Description="HAPMAP Membership">
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##INFO=<ID=OMNI,Number=0,Type=Flag,Description="OMNI Membership">
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#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12045
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20 10003358 rs926982 A C 92318.04 PASS DBSNP129;DBSNP132;DP=5 GT:DP:GQ:PL 0/1:5:51:51,0,95
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20 10003692 rs2064653 A G 119873.04 PASS DBSNP129;DBSNP132;DP=4 GT:DP:GQ:PL 0/1:4:20:20,0,85
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20 10015679 rs113024248 C . 2829.33 PASS DBSNP132;DP=0;OMNI GT:DP:PL ./.
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20 10015790 rs114356776 G . 43.60 PASS DBSNP132;DP=0 GT:DP:PL ./.
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20 10019093 rs575534 A G 69795.04 PASS DBSNP129;DBSNP132;DP=6;OMNI GT:DP:GQ:PL 0/0:6:18:0,18,211
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20 10019169 rs7260784 C . 1193.61 PASS DBSNP129;DBSNP132;DP=6;HAPMAP;OMNI GT:DP:GQ:PL 0/0:6:18:0,18,211
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20 10032432 rs78089752 A . 367.04 PASS DBSNP132;DP=8;OMNI GT:DP:GQ:PL 0/0:8:24:0,24,293
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20 10037119 . G . 469.85 PASS DBSNP129;DP=2 GT:DP:GQ:PL 0/0:2:6:0,6,65
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20 10047435 rs598275 G A 82495.04 PASS DBSNP129;DBSNP132;DP=2;HAPMAP;OMNI GT:DP:GQ:PL 1/1:2:6:69,6,0
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