gatk-3.8/java
hanna cab8394103 The sharding system now buffers reads, with a size determined by command-line argument. Will investigate whether/how this
impacts performance on low-pass data and, if it works well, will create a more automatic version of the tool.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3709 348d0f76-0448-11de-a6fe-93d51630548a
2010-07-01 22:28:55 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src The sharding system now buffers reads, with a size determined by command-line argument. Will investigate whether/how this 2010-07-01 22:28:55 +00:00
test fixing VCF header format and info fields so that they propery emit the unbounded count value correctly for vcf4 or vcf3. Eric we should update the vcf4 spec page to indicate format fields are allowed to use the unbounded count as well (if this is true). 2010-07-01 22:02:16 +00:00