David Roazen caafe84e74 Rev htsjdk to version 1.132 and picard to version 1.131, and switch to using the versions in maven central ... -We now pull htsjdk and picard from maven central. -Updated the GATK codebase as necessary to adapt to changes in the Feature interface. -Since VCFHeader now requires that all header lines have unique keys, uniquified the keys of GVCFBlock header lines by including the min/max GQ in the key. Updated MD5s accordingly. -Other MD5s changed as a result of an htsjdk fix to eliminate "-0" in VCF output.		2015-05-14 15:26:23 -04:00
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src	since Picard mark duplicates moved to a different package, this class was broken. here's the fix. it would be good to have tests for all the scala picard-wrappers, but that is out of scope for this commit.	2015-04-13 08:44:30 -04:00
pom.xml	Rev htsjdk to version 1.132 and picard to version 1.131, and switch to using the versions in maven central	2015-05-14 15:26:23 -04:00