zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/public/java/test/org/broadinstitute/sting
History
Mauricio Carneiro cd68cc239b Added knuth-shuffle (KS) and randomSubset using KS to MathUtils 
* Knuth-shuffle is a simple, yet effective array permutator (hope this is good english).
         * added a simple randomSubset that returns a random subset without repeats of any given array with the same probability for every permutation.
         * added unit tests to both functions
 		2012-01-03 09:29:46 -05:00
..
alignment Reinitialize random seed in the bwa bindings from the fixed seed stored in the 2011-07-22 13:41:53 -04:00
commandline Added ability to specify arguments in files via -args/--arg_file 2011-10-24 15:58:34 -04:00
gatk fixing adaptor clipping effect on recalibration integration test 2012-01-01 22:20:06 -05:00
jna When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter. 2011-12-16 18:09:25 -05:00
utils Added knuth-shuffle (KS) and randomSubset using KS to MathUtils 2012-01-03 09:29:46 -05:00
BaseTest.java Removing cruft that snuck in last commit. 2011-12-16 23:00:16 -05:00
MD5DB.java Merged bug fix from Stable into Unstable 2011-10-13 18:02:06 -04:00
StingTextReporter.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
WalkerTest.java All MD5 mismatches for test are shown 2011-10-04 15:53:52 -07:00