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gatk-3.8/java/src/org/broadinstitute/sting/playground/fourbasecaller
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kiran 7949e377e4 Intermediate commit. Refactored some simple base manipulation stuff into BaseUtils.java. Generalized some likelihood computation logic to make future possible EM-ing easier. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@424 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-04-15 04:18:07 +00:00
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BasecallingBaseModel.java Intermediate commit. Refactored some simple base manipulation stuff into BaseUtils.java. Generalized some likelihood computation logic to make future possible EM-ing easier. 2009-04-15 04:18:07 +00:00
BasecallingReadModel.java Intermediate commit. Refactored some simple base manipulation stuff into BaseUtils.java. Generalized some likelihood computation logic to make future possible EM-ing easier. 2009-04-15 04:18:07 +00:00
CombineSamAndFourProbs.java Ignore null values. 2009-04-10 04:18:20 +00:00
FourBaseRecaller.java Intermediate commit. Refactored some simple base manipulation stuff into BaseUtils.java. Generalized some likelihood computation logic to make future possible EM-ing easier. 2009-04-15 04:18:07 +00:00
FourProb.java Intermediate commit. Refactored some simple base manipulation stuff into BaseUtils.java. Generalized some likelihood computation logic to make future possible EM-ing easier. 2009-04-15 04:18:07 +00:00
MatchSQTagToStrand.java If a SAMRecord is on the negative strand, reverse complement the SQ tag. 2009-04-12 19:42:24 +00:00