gatk3的最后一个经典版本3.8

Mauricio Carneiro ca669ae744 Optimizations to the CoverageByRG walker ... * outputs only the groups of read groups necessary, avoiding multiple pileup creations every call to map * now also counts the number of variants associated with a given ROD (dbSNP) exist in the interval * new column: interval size		2012-01-03 09:36:01 -05:00
public	Added getPileupForReadGroups to ReadBackPileup	2012-01-03 09:35:11 -05:00
settings	Update Picard to fix a bug Mauricio found in Picard where Picard unnecessarily depends on Snappy during some usages of SortingCollection.	2011-12-29 14:35:02 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2011-12-22 10:49:52 -05:00
ivy.xml	Let this one slip through my commits.	2011-12-26 21:55:02 -05:00