gatk-3.8/java
ebanks ca5b274f16 Unit, integration, and performance tests are all busted, so this is a good time to make a big commit...
Major cleanup of the genotype writer code from the calling end.  UG no longer supports making calls in anything but VCF, and that allows us to use the VCFWriter more generically now.  Putting the ball in Matt's court to finish collapsing everything.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3996 348d0f76-0448-11de-a6fe-93d51630548a
2010-08-10 04:18:29 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src Unit, integration, and performance tests are all busted, so this is a good time to make a big commit... 2010-08-10 04:18:29 +00:00
test Unit, integration, and performance tests are all busted, so this is a good time to make a big commit... 2010-08-10 04:18:29 +00:00