ebanks ca4eab1d23 Now annotations that require reads return null if there's no alignment context, so that running without reads adds annotations only for the appropriate fields. ... Added an integration test for the read-less case. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3525 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-09 20:36:46 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Now annotations that require reads return null if there's no alignment context, so that running without reads adds annotations only for the appropriate fields.	2010-06-09 20:36:46 +00:00
test/org/broadinstitute/sting	Now annotations that require reads return null if there's no alignment context, so that running without reads adds annotations only for the appropriate fields.	2010-06-09 20:36:46 +00:00