aaron 790d2a7776 adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2918 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-03 15:56:44 +00:00
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annotator	Update to VCF code to get it up to spec.	2010-03-03 06:12:42 +00:00
concordance	Update to VCF code to get it up to spec.	2010-03-03 06:12:42 +00:00
fasta	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00
filters	Update to VCF code to get it up to spec.	2010-03-03 06:12:42 +00:00
genotyper	Update to VCF code to get it up to spec.	2010-03-03 06:12:42 +00:00
indels	Killed the old cleaner code. Bye bye.	2010-02-22 20:49:58 +00:00
recalibration	Removing debug statement. oops.	2010-02-19 15:26:22 +00:00
varianteval	Reverting	2010-02-05 15:57:09 +00:00
DepthOfCoverageIntegrationTest.java	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00
PileupWalkerIntegrationTest.java	Now that we changed how deletions are represented, got to update MD5...	2009-12-30 22:00:58 +00:00
PrintReadsWalkerTest.java	adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come.	2010-03-03 15:56:44 +00:00