Mark DePristo 763c81d520 No longer enforce MAX_ALLELE_SIZE in VCF codec ... -- Instead issue a warning when a large (>1MB) record is encountered -- Optimized ref.getBytes()[i] => (byte)ref.charAt(i), which avoids an implicit O(n) allocation each iteration through computeReverseClipping()		2012-01-18 07:35:11 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	No longer enforce MAX_ALLELE_SIZE in VCF codec	2012-01-18 07:35:11 -05:00
test	UnitTest for reverseAlleleClipping	2012-01-18 07:35:11 -05:00