gatk3的最后一个经典版本3.8

Mauricio Carneiro ca055d8804 Reimplementation of the BAM procesing pipeline using the metadata information file. ... Pipeline runs end-to-end using example metadata and has been tested only for cases where everything is ideal. Next step is to bring this to the cloud, test all different scenario (multiple tumors, single ended, missing parameters etc). Parallel next step is to add QC metrics.		2012-10-10 13:19:04 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Turning on allele trimming for the haplotype caller.	2012-10-10 10:47:26 -04:00
public	First implementation of a generic 'bundled' Data Processing Pipeline for germline and cancer.	2012-10-10 13:19:03 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	Proper error handling in NanoScheduler	2012-09-19 17:03:13 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00