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gatk-3.8/public/scala
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Mauricio Carneiro c9d8b22092 Added BWASW support to the pipeline 
Data Processing Pipeline can now use BWASW for realigning the reads. Useful for Ion Torrent data.
 		2011-10-20 18:36:28 -04:00
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qscript/org/broadinstitute/sting/queue/qscripts Added BWASW support to the pipeline 2011-10-20 18:36:28 -04:00
src/org/broadinstitute/sting/queue Added BWASW support to the pipeline 2011-10-20 18:36:28 -04:00
test/org/broadinstitute/sting/queue GATK read group requirement iron hand 2011-10-06 08:40:35 -07:00