Mauricio Carneiro c9d8b22092 Added BWASW support to the pipeline ... Data Processing Pipeline can now use BWASW for realigning the reads. Useful for Ion Torrent data.		2011-10-20 18:36:28 -04:00
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R	Fixing errors in queueJobReport runtime unit	2011-10-07 12:04:53 -07:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	You know how the wiki has a big section on commiting local changes to BRANCHES of the repository you clone it from? Yeah. It sucks if you don't do that.	2011-10-19 17:42:37 -04:00
packages	Enable testing of the jars produced by the packaging system.	2011-10-14 03:08:28 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Added BWASW support to the pipeline	2011-10-20 18:36:28 -04:00
testdata	Oops, forgot the PED test file	2011-10-05 21:09:08 -07:00