Ryan Poplin c9944d81ef Skip array needs to also be used in the updateDataForRead function of the delocalized BQSR.		2012-09-04 10:33:37 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Skip array needs to also be used in the updateDataForRead function of the delocalized BQSR.	2012-09-04 10:33:37 -04:00
test	I started to put together a set of unit tests for the PileupElement creation functionality of LocusIteratorByState and found pretty quickly that it's definitely still busted for indels. The data provider is nowhere near comprehensive yet, but I need to sit back and think about how to really test some of the functionality of LIBS. Committing what I have for now because at the very least it'll be helpful going forward (failing tests are commented out with TODO).	2012-08-30 22:49:13 -04:00