droazen 8d5b4af8ca Binomial and Multinomial interfaces for probability and coefficients in log and real space. Passed all unit tests. ... BinomialCumulativeProbability was reformatted to follow the now standard parameter order. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6057 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-22 22:55:15 +00:00
..
annotations	More archiving	2010-07-12 17:04:41 +00:00
concordance	Archiving	2010-07-27 02:47:18 +00:00
glf	Moving GLF code to archive	2011-01-15 22:42:42 +00:00
graphalign	archiving, removing, or promoting to core from playground	2010-08-27 01:07:42 +00:00
mendelian	archiving, removing, or promoting to core from playground	2010-08-27 01:07:42 +00:00
multisamplecaller	Retiring multi-sample genotyper	2010-05-20 14:11:11 +00:00
oldepthofcoverage	CoverageStatistics has now replaced DepthOfCoverage -- old DoC is in the archive.	2010-04-01 16:27:23 +00:00
oldindels	Removing deprecated version of indel genotyper (putting it in archive in case we need to reproduce original 1KG indel calls for some reason).	2010-01-31 14:05:36 +00:00
oldsecondarybases	Removing deprecated code and walkers for which I had the green light from repository.	2009-12-01 05:58:20 +00:00
poolseq	Binomial and Multinomial interfaces for probability and coefficients in log and real space. Passed all unit tests.	2011-06-22 22:55:15 +00:00
secondaryBases	archiving, removing, or promoting to core from playground	2010-08-27 01:07:42 +00:00
vcftools	1. Refactoring of GenoypeWriters so that parallelization now works again with VCF4.0. We now have just a single reference to the old VCF classes, and that one will be purged soon.	2010-07-20 06:16:45 +00:00
ACTransitionTable.java	Removed unused importants, but some of these scripts are now out of date (they have been for a long time) so they don't compile anyway	2011-05-22 18:43:48 +00:00
AlleleBalanceInspector.java	more clean-up: moving AlleleBalanceInspector to archive.	2010-04-16 20:53:33 +00:00
AlleleFrequencyComparison.java	Removed unused importants, but some of these scripts are now out of date (they have been for a long time) so they don't compile anyway	2011-05-22 18:43:48 +00:00
AminoAcidTransition.java	Removed unused importants, but some of these scripts are now out of date (they have been for a long time) so they don't compile anyway	2011-05-22 18:43:48 +00:00
BaseTransitionTableCalculatorJavaWalker.java	Eric broke the build. Eric broke the build.	2010-12-15 17:01:38 +00:00
ConcordanceTruthTable.java	No longer used	2010-04-16 17:57:39 +00:00
DSBWalker.java	moving older versions of the oneoff project to archive, bye-bye	2010-02-04 19:46:27 +00:00
DSBWalkerV2.java	moving older versions of the oneoff project to archive, bye-bye	2010-02-04 19:46:27 +00:00
DuplicateQualsWalker.java	Home for retired duplicateQuals analysis utility	2010-01-06 15:05:00 +00:00
HapmapPoolAllelicInfoWalker.java	No longer used	2010-04-16 17:57:39 +00:00