aaron 9d659199f3 bam and fasta files generated with the artificial tools. These will be included in the GATK distro. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1151 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-01 22:49:31 +00:00
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TabularDataTest.dat	Revised ROD system. Split the system in Basic type and interface. Enabled more control over rod accessing, including an initialize() function to fetch headers and other options from the file. Added general tabular rod, which has a named columns and supports a map<String,String> interface. Comes with shiny new Junit system for RODs. Also, added simple python script for accessing picard data.	2009-05-14 21:06:28 +00:00
TabularDataTest2.dat	Better interface to the tabular ROD, now makes writing files easier. Also has corresponding test files	2009-05-14 23:20:11 +00:00
ValidatingPileupTargets.list	Better validation scripts and data	2009-04-29 17:40:07 +00:00
defaultGATKConfig.cfg	Apprach v2. Added python analysis script, so java no longer must be used to analyses quality score data. About to refactor out lots of unneeded code	2009-06-20 16:00:23 +00:00
exampleBAM.bam	bam and fasta files generated with the artificial tools. These will be included in the GATK distro.	2009-07-01 22:49:31 +00:00
exampleBAM.bam.bai	bam and fasta files generated with the artificial tools. These will be included in the GATK distro.	2009-07-01 22:49:31 +00:00
exampleFASTA.dict	bam and fasta files generated with the artificial tools. These will be included in the GATK distro.	2009-07-01 22:49:31 +00:00
exampleFASTA.fasta	bam and fasta files generated with the artificial tools. These will be included in the GATK distro.	2009-07-01 22:49:31 +00:00
exampleFASTA.fasta.fai	bam and fasta files generated with the artificial tools. These will be included in the GATK distro.	2009-07-01 22:49:31 +00:00
gFFTest.gff	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
logisticParamsTest.list	Basic logistic regression support for calibrating qualities; mostly for Andrew to experiment with	2009-04-24 19:09:50 +00:00