Mark DePristo 64d4238e2f 99% working version of BCF2 encoder / decoder ... -- fixed final bugs with PL encoding / decoding -- Ready for testing by other members of the group -- Current performance numbers aren't so great, but they will improve in the next phase of BCF2 optimizations -- Fixed a nasty bug in the filter field -- Not that some (many?) GATK tools won't work with BCF because they internally assume values are Strings not their true types Read 1500 genotypes file in VCF -> VCF : 11 seconds Read 1500 genotypes file in VCF -> BCF : 9.5 seconds VariantEval 1500 genotypes file in VCF : 3 seconds VariantEval 1500 genotypes file in BCF : 3 seconds		2012-05-24 10:57:05 -04:00
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bcf2	99% working version of BCF2 encoder / decoder	2012-05-24 10:57:05 -04:00
hapmap	Rev Tribble to r97, adding binary feature support	2012-05-03 07:31:48 -04:00
vcf	GATK now writes BCF output to any file with .bcf extension	2012-05-24 10:57:00 -04:00