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gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk/walkers
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Mark DePristo 3c37ea014b Retire original TraverseActiveRegion, leaving only the new optimized version 
-- Required some updates to MD5s, which was unexpected, and will be sorted out later with more detailed unit tests
 		2013-01-15 10:24:45 -05:00
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annotator Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
beagle Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
bqsr Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
compression/reducereads Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diagnostics Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diffengine Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
fasta Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
genotyper Updating MD5s in HC and UG that changed due to new LIBS 2013-01-11 15:17:19 -05:00
haplotypecaller Retire original TraverseActiveRegion, leaving only the new optimized version 2013-01-15 10:24:45 -05:00
indels Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
phasing Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
validation Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
varianteval Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
variantrecalibration Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
variantutils Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable 2013-01-14 13:27:34 -05:00