gatk3的最后一个经典版本3.8

depristo c8a01e6569 Merge pull request #53 from broadinstitute/rp_pcrfree_bad_mappingquality_GSA-780 ... Bug fix in LikelihoodCalculationEngine: Mapping quality was being cast t...		2013-02-22 05:52:50 -08:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Bug fix in LikelihoodCalculationEngine: Mapping quality was being cast to a byte and overflowing for reads with large mapping quality scores.	2013-02-21 14:34:17 -05:00
public	Vast improvements to AssessNA12878 code and functionality	2013-02-21 20:43:12 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Minor build.xml cleanup post-variant-migration	2013-02-06 11:16:52 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Replace org.broadinstitute.variant with jar built from the Picard repo	2013-02-05 17:24:25 -05:00