Ryan Poplin c87ad8c0ef Bug fixes related to HC's GGA mode. Tracking just the artificial allele isn't sufficient when there are multiple GGA records that change the reference basis. Also, duplicated records screw up the tracking of merged alleles.		2013-01-09 10:00:46 -05:00
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src/org/broadinstitute/sting	Bug fixes related to HC's GGA mode. Tracking just the artificial allele isn't sufficient when there are multiple GGA records that change the reference basis. Also, duplicated records screw up the tracking of merged alleles.	2013-01-09 10:00:46 -05:00
test/org/broadinstitute/sting	Move around the DiploidGenotype classes (so it can be used by the GATKPaperGenotyper)	2013-01-08 15:53:11 -05:00