Mauricio Carneiro 663184ee9d Added test mode to PPP ... * in test mode, no @PG tags are output to the final bam file * updated pipeline test to use -test mode. * MD5s updated accordingly		2011-12-12 18:29:06 -05:00
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extensions/gatk	Intermediate commit cleaning up scatter intervals	2011-09-09 12:56:45 -04:00
function	Queue now properly escapes all shell arguments in generated shell scripts	2011-12-01 18:13:44 -05:00
pipeline	Added test mode to PPP	2011-12-12 18:29:06 -05:00
util	Queue now properly escapes all shell arguments in generated shell scripts	2011-12-01 18:13:44 -05:00