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gatk-3.8/public/scala/qscript/org/broadinstitute/sting/queue/qscripts
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Mauricio Carneiro 663184ee9d Added test mode to PPP 
* in test mode, no @PG tags are output to the final bam file
* updated pipeline test to use -test mode.
* MD5s updated accordingly
 		2011-12-12 18:29:06 -05:00
..
examples Queue now properly escapes all shell arguments in generated shell scripts 2011-12-01 18:13:44 -05:00
lib moving the example scala scripts to the qscripts package. 2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala Added test mode to DPP 2011-12-12 18:29:06 -05:00
GATKResourcesBundle.scala Queue now properly escapes all shell arguments in generated shell scripts 2011-12-01 18:13:44 -05:00
MethodsDevelopmentCallingPipeline.scala Queue now properly escapes all shell arguments in generated shell scripts 2011-12-01 18:13:44 -05:00
PacbioProcessingPipeline.scala Added test mode to PPP 2011-12-12 18:29:06 -05:00