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gatk-3.8/public/scala
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Mauricio Carneiro 663184ee9d Added test mode to PPP 
* in test mode, no @PG tags are output to the final bam file
* updated pipeline test to use -test mode.
* MD5s updated accordingly
 		2011-12-12 18:29:06 -05:00
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qscript/org/broadinstitute/sting/queue/qscripts Added test mode to PPP 2011-12-12 18:29:06 -05:00
src/org/broadinstitute/sting/queue Use optional() instead of required() to construct javaMemoryLimit argument in JavaCommandLineFunction 2011-12-05 14:06:00 -05:00
test/org/broadinstitute/sting/queue Added test mode to PPP 2011-12-12 18:29:06 -05:00