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gatk-3.8/public/java/test/org/broadinstitute/sting/gatk
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Mark DePristo c83f9432eb Cleaned up RefMetaDataTracker 
Renamed many functions to more clearly state what they are actually doing
Removed unnecessary / unused functionality, reducing interface complexity
Updated all uses of this code in GATK
Added generic, type-safe accessors to RefMetaDataTracker such as public <T> List<T> getValues(final String name, Class<T> clazz)
Added standard refMetaDataTracker accessors to RodBinding, so you can do everything you can for generic rods with the tracker directly with with the RodBinding
 		2011-07-27 23:25:52 -04:00
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arguments Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
datasources Cleaned up RefMetaDataTracker 2011-07-27 23:25:52 -04:00
executive Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
filters Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
iterators Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
refdata Actually should have been gone... 2011-07-25 13:27:42 -04:00
report Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
traversals Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
walkers Updated MD5 for PhaseByTransmissionIntegrationTest 2011-07-26 17:52:25 -04:00
GenomeAnalysisEngineUnitTest.java Fixing broken paths to the testdata directory throughout the codebase. 2011-06-29 17:36:47 -04:00
WalkerManagerUnitTest.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00