gatk-3.8

History

Mark DePristo c83f9432eb Cleaned up RefMetaDataTracker Renamed many functions to more clearly state what they are actually doing Removed unnecessary / unused functionality, reducing interface complexity Updated all uses of this code in GATK Added generic, type-safe accessors to RefMetaDataTracker such as public <T> List<T> getValues(final String name, Class<T> clazz) Added standard refMetaDataTracker accessors to RodBinding, so you can do everything you can for generic rods with the tracker directly with with the RodBinding	2011-07-27 23:25:52 -04:00
..
net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Cleaned up RefMetaDataTracker	2011-07-27 23:25:52 -04:00

Mark DePristo c83f9432eb Cleaned up RefMetaDataTracker

Renamed many functions to more clearly state what they are actually doing
Removed unnecessary / unused functionality, reducing interface complexity
Updated all uses of this code in GATK
Added generic, type-safe accessors to RefMetaDataTracker such as public <T> List<T> getValues(final String name, Class<T> clazz)
Added standard refMetaDataTracker accessors to RodBinding, so you can do everything you can for generic rods with the tracker directly with with the RodBinding

2011-07-27 23:25:52 -04:00

net/sf

Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.

2011-07-27 22:06:23 -04:00

org/broadinstitute/sting

Cleaned up RefMetaDataTracker

2011-07-27 23:25:52 -04:00