Mark DePristo c83f9432eb Cleaned up RefMetaDataTracker ... Renamed many functions to more clearly state what they are actually doing Removed unnecessary / unused functionality, reducing interface complexity Updated all uses of this code in GATK Added generic, type-safe accessors to RefMetaDataTracker such as public <T> List<T> getValues(final String name, Class<T> clazz) Added standard refMetaDataTracker accessors to RodBinding, so you can do everything you can for generic rods with the tracker directly with with the RodBinding		2011-07-27 23:25:52 -04:00
..
R	Moved gsalib sources from private/ to public/	2011-07-27 12:29:43 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Cleaned up RefMetaDataTracker	2011-07-27 23:25:52 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/stable	2011-07-23 12:59:53 -04:00
testdata	Testdata for diffObjects.	2011-07-18 10:47:03 -04:00