Alec Wysoker c8368ae2a5 Eliminate 7-element arrays in BaseCounts and BaseAndQualsCount and replace with in-line primitive attributes. This is ugly but reduces heap overhead, and changes are localized. When used in conjunction with Mauricio's FastUtil changes it saves and additional 9% or so of execution time.		2013-02-27 12:49:56 -05:00
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src/org/broadinstitute/sting	Eliminate 7-element arrays in BaseCounts and BaseAndQualsCount and replace with in-line primitive attributes. This is ugly but reduces heap overhead, and changes are localized. When used in conjunction with Mauricio's FastUtil changes it saves and additional 9% or so of execution time.	2013-02-27 12:49:56 -05:00
test/org/broadinstitute/sting	Merged bug fix from Stable into Unstable	2013-02-26 21:54:54 -05:00