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datasources
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GATK engine: add ability to do on-the-fly BAM file sample renaming at runtime
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2013-07-18 15:48:42 -04:00 |
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downsampling
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Exclude reduced reads from elimination during downsampling
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2013-06-11 16:16:26 -04:00 |
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executive
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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filters
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This commit addresses JIRA issue GSA-948: Prevent users from doing the wrong thing with RNA-Seq data and the GATK.
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2013-06-10 10:44:42 -04:00 |
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iterators
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SAMDataSource: always consolidate cigar strings into canonical form
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2013-06-19 13:29:01 -04:00 |
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refdata
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Adaptations to accomodate Tribble API changes, comprising mostly of the following.
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2013-08-19 15:52:47 -04:00 |
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report
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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samples
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Trivial update to ceutrio.ped file to make it really the CEU trio sample names
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2013-05-14 17:08:13 -04:00 |
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traversals
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GATK engine: add ability to do on-the-fly BAM file sample renaming at runtime
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2013-07-18 15:48:42 -04:00 |
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walkers
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Fixed bug in the filtering of lifted over variants where a deletion at the end of a contig could cause it to error out.
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2013-12-11 14:07:18 -05:00 |
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CommandLineGATKUnitTest.java
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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EngineFeaturesIntegrationTest.java
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Adaptations to accomodate Tribble API changes, comprising mostly of the following.
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2013-08-19 15:52:47 -04:00 |
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GenomeAnalysisEngineUnitTest.java
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GATK engine: add ability to do on-the-fly BAM file sample renaming at runtime
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2013-07-18 15:48:42 -04:00 |
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MaxRuntimeIntegrationTest.java
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Subshard timeouts in the GATK
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2013-05-15 07:00:39 -04:00 |
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ReadMetricsUnitTest.java
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GATK engine: add ability to do on-the-fly BAM file sample renaming at runtime
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2013-07-18 15:48:42 -04:00 |
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WalkerManagerUnitTest.java
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Updated all JAVA file licenses accordingly
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2013-01-10 17:06:41 -05:00 |
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