ebanks c7fe062cb7 Refactored the VCF codec classes to minimize code duplication (which happened during the VCF3/4 split). Now, both codecs extend the AbstractVCFCodec class and all shared functionality exists there. Only methods that differ between the various codecs (e.g. because FILTER strings are encoded differently) are defined in the actual codecs. While I was in there, I put in checks for invalid empty inputs in the ID, FILTER, and INFO fields. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5917 348d0f76-0448-11de-a6fe-93d51630548a		2011-06-01 19:40:47 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Refactored the VCF codec classes to minimize code duplication (which happened during the VCF3/4 split). Now, both codecs extend the AbstractVCFCodec class and all shared functionality exists there. Only methods that differ between the various codecs (e.g. because FILTER strings are encoded differently) are defined in the actual codecs. While I was in there, I put in checks for invalid empty inputs in the ID, FILTER, and INFO fields.	2011-06-01 19:40:47 +00:00
test	There is an edge case ( |Set1| = 5, |Set2| = 4) where the exact p-value exceeds the range of the normal distribution we want to invert. For the edge cases, this happens exactly at the mean, and so this can be safely replaced with a z value of 0.0	2011-06-01 17:30:09 +00:00