| .. |
|
annotator
|
Update expected test output for Java 7
|
2013-05-01 16:18:01 -04:00 |
|
beagle
|
Updated all JAVA file licenses accordingly
|
2013-01-10 17:06:41 -05:00 |
|
bqsr
|
Trivial BQSR bug fixes and improvement
|
2013-04-11 17:08:35 -04:00 |
|
compression/reducereads
|
e# This is a combination of 2 commits.
|
2013-05-03 11:19:14 -04:00 |
|
diagnostics
|
e# This is a combination of 2 commits.
|
2013-05-03 11:19:14 -04:00 |
|
diffengine
|
Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)
|
2013-03-12 10:57:14 -04:00 |
|
fasta
|
Updated all JAVA file licenses accordingly
|
2013-01-10 17:06:41 -05:00 |
|
filters
|
Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).
|
2013-04-05 00:52:32 -04:00 |
|
genotyper
|
Re-fix md5's that changed due to conflicting pushes
|
2013-05-03 14:59:16 -04:00 |
|
haplotypecaller
|
Re-fix md5's that changed due to conflicting pushes
|
2013-05-03 14:59:16 -04:00 |
|
indels
|
Fixed IndelRealigner reference length bug (GSA-774)
|
2013-02-19 16:00:36 -05:00 |
|
phasing
|
Updated all JAVA file licenses accordingly
|
2013-01-10 17:06:41 -05:00 |
|
validation
|
MathUtils.randomSubset() now uses Collections.shuffle() (indirectly, through the other methods
|
2013-03-29 14:52:10 -04:00 |
|
varianteval
|
Move some VCF/VariantContext methods back to the GATK based on feedback
|
2013-01-29 16:56:55 -05:00 |
|
variantrecalibration
|
Update MD5s for VQSR header change
|
2013-04-16 11:45:45 -04:00 |
|
variantutils
|
- Fixed a small bug in the printout of molten data in GenotypeConcordance
|
2013-05-02 09:16:07 -04:00 |
98021db264