Mauricio Carneiro c7d0a9ebee Forgot to test for inter-chromosomal mates in the adaptor clipping ... * Fixing bug caught by Eric (and Kristian)		2011-12-30 00:19:53 -05:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Forgot to test for inter-chromosomal mates in the adaptor clipping	2011-12-30 00:19:53 -05:00