gatk3的最后一个经典版本3.8

Mark DePristo c7864c7256 Filter application order is now deterministic, in the order defined by the walker ... -- For no apparent reason we were using a HashSet to store the ReadFilters, so the order of operations was really arbitrarily applied. The order now is (1) the order of the walker intrinsic filters (2) read group black list (if provided) (3) command line filters (if provided)		2011-10-06 18:51:40 -07:00
public	Filter application order is now deterministic, in the order defined by the walker	2011-10-06 18:51:40 -07:00
settings	Merged bug fix from Stable into Unstable	2011-09-27 14:34:39 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Merged bug fix from Stable into Unstable	2011-10-06 12:54:52 -04:00
ivy.xml	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00