kcibul ce72932a45 * refactored GenomeLoc to use contigIndex internally for performance and fixed several calling classes ... * added basic unit test for GenomeLoc * fixed bug when parsing genome locations like chr1:5000 the start position was being left as maxint rather than being set to the same as the stop position. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@365 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-12 02:25:17 +00:00
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cmdLine	Fix argument parser test case.	2009-03-27 16:05:18 +00:00
FastaSequenceFile2Test.java	Initial test suite for FastaSequenceFile2, so I can add parallelism support with abandon.	2009-04-11 21:10:42 +00:00
GenomeLocTest.java	* refactored GenomeLoc to use contigIndex internally for performance and fixed several calling classes	2009-04-12 02:25:17 +00:00