gatk3的最后一个经典版本3.8

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Eric Banks c752b9bca6 Fixed a small feature/bug that I introduced with the spanning deletions genotyping. In the case where there's a low quality SNP under a spanning deletion in the gvcfs: if the SNP is not genotyped by GenotypeGVCFs (because it's just noise) we were still emitting a record with just the symbolic DEL allele (because that allele is high quality). We no longer do that.		2015-05-13 11:19:40 -04:00
licensing	Updated license information	2014-10-14 17:10:12 -04:00
protected	Fixed a small feature/bug that I introduced with the spanning deletions genotyping.	2015-05-13 11:19:40 -04:00
public	Merge pull request #974 from broadinstitute/jw_Var2BinPEDSwap	2015-05-12 08:49:16 -04:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/