David Roazen 9d2cda3d41 Removed a public -> private dependency in our test suite.		2011-08-12 17:29:10 -04:00
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baq	Removed a public -> private dependency in our test suite.	2011-08-12 17:29:10 -04:00
bed	Fixing broken paths to the testdata directory throughout the codebase.	2011-06-29 17:36:47 -04:00
codecs	Renaming the HapMap codec and feature to RawHapMap so that we don't get esoteric errors when trying to bind a rod with the name 'hapmap' (since it was also a feature).	2011-08-12 11:11:56 -04:00
collections	…
fasta	Long-delayed change to CachingIndexedFastaSequenceFile. Made the cache	2011-07-01 16:04:30 -04:00
genotype	Darn, forgot to update unit tests.	2011-08-03 12:31:08 -04:00
interval	…
pileup	…
report	…
sam	…
text	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
threading	Removed GATK use of distributed parallelism framework.	2011-07-20 16:26:09 -04:00
variantcontext	More tools moved over. Fixed the VariantContextIntegrationTest which was not useful because the md5s were all removed. In the future, instead of removing md5s (putting it in 'parameterization' mode), you should instead use @Test{enabled=false} since it's easier to track.	2011-08-10 14:24:40 -04:00
BaseUtilsUnitTest.java	…
GenomeLocParserUnitTest.java	…
GenomeLocSortedSetUnitTest.java	…
GenomeLocUnitTest.java	…
MWUnitTest.java	…
MathUtilsUnitTest.java	…
PathUtilsUnitTest.java	…
ReadUtilsUnitTest.java	…
ReservoirDownsamplerUnitTest.java	…
SimpleTimerUnitTest.java	…
UtilsUnitTest.java	…