Eric Banks c6b57fffda Added allele biased down-sampling capabilities to the PerReadAlleleLikelihoodMap object, which means that both the UG and HC can use this functionality. Note that it's only available in protected, so GATK-lite users won't be allowed to enable it. Needs more testing.		2012-10-24 22:52:25 -04:00
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src/org/broadinstitute/sting	Added allele biased down-sampling capabilities to the PerReadAlleleLikelihoodMap object, which means that both the UG and HC can use this functionality. Note that it's only available in protected, so GATK-lite users won't be allowed to enable it. Needs more testing.	2012-10-24 22:52:25 -04:00
test/org/broadinstitute/sting	MaxAltAlleles now defaults to 6, no more MaxAltAllelesForIndels	2012-10-22 13:47:56 -04:00