2) Keep track of whether vcf records are unfiltered vs. pass filters in the variant context so we can regenerate the records on output. 3) No more "ID" hard-coded all over the code to set the VariantContext ID. Use a static variable instead. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3840 348d0f76-0448-11de-a6fe-93d51630548a |
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| broadinstitute/sting | ||