ebanks c6ad26e04f 1) When quals/GQs are really integers (x.00), strip off the floating points. ... 2) Keep track of whether vcf records are unfiltered vs. pass filters in the variant context so we can regenerate the records on output. 3) No more "ID" hard-coded all over the code to set the VariantContext ID. Use a static variable instead. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3840 348d0f76-0448-11de-a6fe-93d51630548a		2010-07-20 18:01:45 +00:00
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net/sf/picard/reference	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.	2010-07-01 04:40:31 +00:00
org/broadinstitute/sting	1) When quals/GQs are really integers (x.00), strip off the floating points.	2010-07-20 18:01:45 +00:00