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gatk-3.8/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration
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ebanks 78a4d8ec3d Removing more references to VCFRecord 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3790 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-07-14 16:34:15 +00:00
..
ApplyVariantCuts.java Removing more references to VCFRecord 2010-07-14 16:34:15 +00:00
GenerateVariantClustersWalker.java Variant Recalibrator MLE EM algorithm is moved over to variational Bayes EM in order to eliminate problems with singularities when clustering in higher than two dimensions. Because of this there is no longer a number of Gaussians parameter. Wiki will be updated shortly with new recommended command. 2010-07-01 18:51:07 +00:00
VariantClusteringModel.java Adding the variantrecalibration classes. 2010-05-28 18:21:27 +00:00
VariantDataManager.java Adding the variantrecalibration classes. 2010-05-28 18:21:27 +00:00
VariantDatum.java Variant Recalibrator MLE EM algorithm is moved over to variational Bayes EM in order to eliminate problems with singularities when clustering in higher than two dimensions. Because of this there is no longer a number of Gaussians parameter. Wiki will be updated shortly with new recommended command. 2010-07-01 18:51:07 +00:00
VariantGaussianMixtureModel.java Variant Recalibrator MLE EM algorithm is moved over to variational Bayes EM in order to eliminate problems with singularities when clustering in higher than two dimensions. Because of this there is no longer a number of Gaussians parameter. Wiki will be updated shortly with new recommended command. 2010-07-01 18:51:07 +00:00
VariantNearestNeighborsModel.java Adding the variantrecalibration classes. 2010-05-28 18:21:27 +00:00
VariantOptimizationInterface.java Adding the variantrecalibration classes. 2010-05-28 18:21:27 +00:00
VariantOptimizationModel.java Adding the variantrecalibration classes. 2010-05-28 18:21:27 +00:00
VariantRecalibrator.java The GATK no longer writes vcf3.3; welcome to the world of vcf4.0. Needed to fix a few output bugs to get this to work, but it's looking great. Much more still to come. Guillermo: hopefully this doesn't break your local build too badly. 2010-07-14 04:56:58 +00:00
VariantTree.java Adding the variantrecalibration classes. 2010-05-28 18:21:27 +00:00
VariantTreeNode.java Adding the variantrecalibration classes. 2010-05-28 18:21:27 +00:00