gatk3的最后一个经典版本3.8

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Karthik Gururaj c645725fc3 1. Renamed directory structure from public/c++/VectorPairHMM to public/VectorPairHMM/src/main/c++ as per Khalid's suggestion 2. Use java.home in public/VectorPairHMM/pom.xml to pass environment variable JRE_HOME to the make process. This is needed because the Makefile needs to compile JNI code with the flag -I<JRE_HOME>/../include (among others). Assuming that the Maven build process uses a JDK (and not just a JRE), the variable java.home points to the JRE inside maven. 3. Dropped all pretense at cross-platform compatibility. Removed Mac profile from pom.xml for VectorPairHMM		2014-02-26 15:17:15 -08:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Followed Khalid's suggestion for packing libVectorLoglessCaching into	2014-02-26 11:47:42 -08:00
public	1. Renamed directory structure from public/c++/VectorPairHMM to	2014-02-26 15:17:15 -08:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Native library part of git repo	2014-02-26 11:47:42 -08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Add ability to run *KnowledgeBaseTests to maven	2014-02-11 14:08:24 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Moved private/scala/test to private/queue-private/src/test/scala	2014-02-22 01:21:35 +08:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/