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VariantRecalibratorReport
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Removed coloring by mixture weight. Each cluster gets a distinct color, and the legend indicates which cluster has which id and its weight
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2010-08-10 14:28:24 +00:00 |
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VariantReport
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Handle interactive and non-interactive modes more elegantly.
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2010-08-11 02:38:53 +00:00 |
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analyzeConcordance
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Using bitmap() instead of png() since the former doesn't rely on X11.
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2010-02-23 05:31:51 +00:00 |
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Data.Processing.Report.r
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updated a whole bunch of column names to work like i want them to and added more informative figures for DOC
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2010-08-26 18:19:09 +00:00 |
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GATKReport.R
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Placeholder commit. Implements a loader for a new multi-part GATK reporting format. See what it looks like at /home/radon01/kiran/scr1/projects/NewVariantEvalOutput/results/v1/tableexample.txt . Still need to address the issue where numeric columns are being interpreted as a vector of strings, not numbers.
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2010-08-25 18:48:44 +00:00 |
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PlotDepthOfCoverage.R
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Moved CoverageStatistics to core. This will be (soon) renamed DepthOfCoverage; so please use CoverageStatistics
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2010-03-29 13:32:00 +00:00 |
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generateBySamplePlot.R
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R script for graphing depth of coverage by sample name, and generating a loess curve for each sample's data.
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2009-12-10 21:58:01 +00:00 |
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gsacommons.R
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Be more robust to missing or empty files in VariantEval output.
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2010-08-11 02:22:50 +00:00 |
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plot_Annotations_BinnedTruthMetrics.R
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Can run R scripts on the command line
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2010-07-09 00:13:18 +00:00 |
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plot_ClusterReport.R
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Can run R scripts on the command line
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2010-07-09 00:13:18 +00:00 |
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plot_OptimizationCurve.R
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now plots tranches separately from optimizer
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2010-08-10 12:02:52 +00:00 |
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plot_Tranches.R
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Nicer plotting routine for tranches. Add a third arg to suppress the legend.
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2010-08-17 19:20:58 +00:00 |
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plot_residualError_OtherCovariate.R
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Can run R scripts on the command line
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2010-07-09 00:13:18 +00:00 |
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plot_residualError_QualityScoreCovariate.R
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Can run R scripts on the command line
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2010-07-09 00:13:18 +00:00 |
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plot_variantROCCurve.R
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Can run R scripts on the command line
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2010-07-09 00:13:18 +00:00 |
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plotting_library.R
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Can run R scripts on the command line
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2010-07-09 00:13:18 +00:00 |
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tearsheet.r
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This script produces tearsheet and data processing report figures and tables when given Squid and Firehose produced data
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2010-06-18 21:36:29 +00:00 |
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titvFPEst.R
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now plots tranches separately from optimizer
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2010-08-10 12:02:52 +00:00 |
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whole_exome_bait_selection.R
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R script for selecting a variety of baits (using %GC content and normalized coverage) for Nanostring assessment from those used in the Agilent whole exome hybrid selection design.
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2009-09-22 18:10:14 +00:00 |
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