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Khalid Shakir 225ee4880b Using new parameters via skashin to run gatkdocs in the maven conventional subdirectory. 
Updated path for output gatkdocs in nightly build script.
Removed patch in plugin manager that contained a workaround for gatkdocs running in the top level directory.
 		2014-02-14 15:57:21 +08:00
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c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
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doc Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs) 2013-03-12 10:57:14 -04:00
external-example Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution. 2014-02-06 08:25:38 -05:00
gatk-framework Using new parameters via skashin to run gatkdocs in the maven conventional subdirectory. 2014-02-14 15:57:21 +08:00
gatk-package Add ability to run *KnowledgeBaseTests to maven 2014-02-11 14:08:24 -05:00
gatk-queue-extgen Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00
gsalib Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution. 2014-02-06 08:25:38 -05:00
java/config Moved files to maven directories. 2014-02-03 13:50:44 -05:00
package-tests Exclude all transitive dependencies in maven package-tests 2014-02-12 14:59:05 -05:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
queue-framework Add ability to run *KnowledgeBaseTests to maven 2014-02-11 14:08:24 -05:00
queue-package Add ability to run *KnowledgeBaseTests to maven 2014-02-11 14:08:24 -05:00
repo Rev Picard to 1.107.1683 (4 jars) 2014-02-12 15:25:50 -05:00
sting-root Rev Picard to 1.107.1683 (4 jars) 2014-02-12 15:25:50 -05:00
sting-utils Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution. 2014-02-06 08:25:38 -05:00
pom.xml Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script. 2014-02-03 13:50:46 -05:00