140 lines
4.7 KiB
XML
140 lines
4.7 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<parent>
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<groupId>org.broadinstitute.sting</groupId>
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<artifactId>sting-aggregator</artifactId>
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<version>2.8-SNAPSHOT</version>
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<relativePath>../..</relativePath>
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</parent>
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<artifactId>gatk-protected</artifactId>
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<packaging>jar</packaging>
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<name>GATK Protected</name>
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<properties>
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<sting.basedir>${project.basedir}/../..</sting.basedir>
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<sting.packagetests.artifactId>gatk-package</sting.packagetests.artifactId>
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</properties>
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<dependencies>
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>gatk-framework</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>net.sf.jgrapht</groupId>
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<artifactId>jgrapht</artifactId>
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</dependency>
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<dependency>
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<groupId>gov.nist</groupId>
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<artifactId>Jama</artifactId>
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</dependency>
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<dependency>
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<groupId>it.unimi.dsi</groupId>
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<artifactId>fastutil</artifactId>
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</dependency>
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<dependency>
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<groupId>${project.groupId}</groupId>
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<artifactId>gatk-framework</artifactId>
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<version>${project.version}</version>
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<type>test-jar</type>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.testng</groupId>
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<artifactId>testng</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>com.google.caliper</groupId>
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<artifactId>caliper</artifactId>
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<scope>test</scope>
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</dependency>
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</dependencies>
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<build>
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<plugins>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-resources-plugin</artifactId>
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<executions>
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<execution>
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<id>copy-resource-bundle-log4j</id>
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<phase>prepare-package</phase>
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-javadoc-plugin</artifactId>
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<executions>
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<execution>
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<id>extract-resource-bundle</id>
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<phase>prepare-package</phase>
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</execution>
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</executions>
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</plugin>
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<plugin>
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<groupId>org.apache.maven.plugins</groupId>
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<artifactId>maven-invoker-plugin</artifactId>
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<executions>
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<execution>
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<id>package-unittests</id>
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</execution>
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<execution>
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<id>package-integrationtests</id>
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</execution>
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<execution>
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<id>package-largescaletests</id>
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</execution>
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<execution>
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<id>package-knowledgebasetests</id>
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</execution>
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<execution>
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<id>package-pipelinetests</id>
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</execution>
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</executions>
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</plugin>
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</plugins>
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</build>
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<profiles>
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<profile>
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<id>private</id>
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<activation>
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<file>
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<exists>${basedir}/../../private/gatk-private/pom.xml</exists>
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</file>
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</activation>
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<build>
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<plugins>
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<!-- TODO: All tests require access to private. For now. -->
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<plugin>
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<groupId>com.pyx4j</groupId>
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<artifactId>maven-junction-plugin</artifactId>
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<executions>
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<execution>
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<id>link-private-testdata</id>
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<phase>process-test-resources</phase>
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</execution>
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<execution>
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<id>unlink-private-testdata</id>
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<phase>clean</phase>
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</execution>
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</executions>
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</plugin>
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</plugins>
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</build>
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</profile>
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</profiles>
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</project>
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