hanna c63af32fc7 The BWA/C bindings were triggering the local aligner to repeatedly reload the ... ref genome. Make sure the reference genome is cached. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1961 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-03 00:01:55 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	The BWA/C bindings were triggering the local aligner to repeatedly reload the	2009-11-03 00:01:55 +00:00
test/org/broadinstitute/sting	-Generalized the GenotypeConcordance module to deal with any number of individuals (although it will default to its old behavior if the -samples argument is left out).	2009-11-01 05:35:47 +00:00