gatk-3.8/java/test/org/broadinstitute/sting/gatk/walkers
depristo c5f8c4dd0d VariantEval test for tranches file, plus cutting over VE to use the generic Tranches framework
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4656 348d0f76-0448-11de-a6fe-93d51630548a
2010-11-12 13:52:40 +00:00
..
annotator Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
beagle Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
coverage Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
fasta Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
filters Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
genotyper Better precision for the calculated AF value. Now looks at the total number of samples to determine how much precision is necessary. Also, changing default min BQ used for calling in UGv2 to Q17. 2010-11-12 08:31:40 +00:00
indels Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
phasing Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
qc Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
recalibration Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
sequenom Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
varianteval VariantEval test for tranches file, plus cutting over VE to use the generic Tranches framework 2010-11-12 13:52:40 +00:00
variantrecalibration Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
variantutils Updates for broken integration tests. Counting annotations (AC, AF) now work correctly for AC = 0 sites 2010-11-09 19:43:43 +00:00
ClipReadsWalkersIntegrationTest.java Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
PileupWalkerIntegrationTest.java Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
PrintReadsWalkerUnitTest.java Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
VariantsToVCFIntegrationTest.java Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00