Mark DePristo c5f1ceaa95 All read and loci traversals go through NanoScheduler now ... -- The NanoScheduler is doing a good job at tracking important information like time spent in map/reduce/input etc. -- Can be disabled with static boolean in MicroScheduler if we have problems -- See GSA-515 Nanoscheduler GSA-549 Retire TraverseReads and TraverseLoci after testing confirms nano scheduler version in single threaded version is fine		2012-09-05 16:38:21 -04:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	All read and loci traversals go through NanoScheduler now	2012-09-05 16:38:21 -04:00
test	Update integration test system to allow us to differentiate between testing data and cpu parallelism	2012-09-05 16:35:00 -04:00