gatk3的最后一个经典版本3.8

Mark DePristo c5f1ceaa95 All read and loci traversals go through NanoScheduler now ... -- The NanoScheduler is doing a good job at tracking important information like time spent in map/reduce/input etc. -- Can be disabled with static boolean in MicroScheduler if we have problems -- See GSA-515 Nanoscheduler GSA-549 Retire TraverseReads and TraverseLoci after testing confirms nano scheduler version in single threaded version is fine		2012-09-05 16:38:21 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	Revert "fixed a typo in StringText.properties"	2012-09-05 15:21:00 -04:00
public	All read and loci traversals go through NanoScheduler now	2012-09-05 16:38:21 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	a few more useful git ignores	2012-09-01 11:08:36 -04:00
build.xml	More memory for gatkdocs and extracthelp targets	2012-09-05 15:45:22 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00