gatk3的最后一个经典版本3.8

Khalid Shakir c5f1a4325f Updated preQC: ... - full 8.5x11 - concating multiple initiatives / bait_sets - Using NA instead of python None when WR dates are unavailable - In new aggregations where the sample may have per library metrics, only using the sample level metrics, i.e. library is null Updated postQC: - Renamed some variables to assist with traceback() - Fixed crashes on batches with two alleles or two samples such as Seminara_MC_1_09222011 or Engle_MC_2_09222011 - Added dependency tracking to PostCallingQC.scala so that the R script does try to run before the evals are complete Other minor cleanup. Tried to use R 2.13 compactPDF but a few issues to work out with fingerprint boxplots in preQC and geom_text font size in postQC.		2011-09-28 20:23:30 -04:00
public	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-09-28 18:17:34 -04:00
settings	Merged bug fix from Stable into Unstable	2011-09-27 14:34:39 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	To work around potential problem with invalid javax.mail 1.4.1 in ivy cache, added explicit javax.mail 1.4.4 along with build.xml code to remove 1.4.1.	2011-09-20 00:14:35 -04:00
ivy.xml	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00