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gatk3的最后一个经典版本3.8
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David Roazen c5c99c8339 Split long-running integration test classes into multiple classes 
This is to facilitate the current experiment with class-level test
suite parallelism. It's our hope that with these changes, we can get
the runtime of the integration test suite down to 20 minutes or so.

-UnifiedGenotyper tests: these divided nicely into logical categories
 that also happened to distribute the runtime fairly evenly

-UnifiedGenotyperPloidy: these had to be divided arbitrarily into two
 classes in order to halve the runtime

-HaplotypeCaller: turns out that the tests for complex and symbolic
 variants make up half the runtime here, so merely moving these into
 a separate class was sufficient

-BiasedDownsampling: most of these tests use excessively large intervals
 that likely can't be reduced without defeating the goals of the tests. I'm
 disabling these tests for now until they can either be redesigned to use smaller
 intervals around the variants of interest, or refactored into unit tests
 (creating a JIRA for Yossi for this task)
 		2013-03-01 13:55:23 -05:00
licensing Removing the symlink from the private license file 2013-02-09 12:57:44 -05:00
protected Split long-running integration test classes into multiple classes 2013-03-01 13:55:23 -05:00
public Merge pull request #76 from broadinstitute/md_kb_bugfix_GSA-795 2013-03-01 10:52:16 -08:00
settings Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample). 2013-02-21 10:14:11 -05:00
.gitignore Fixing the licensing scripts 2013-01-26 13:42:49 -05:00
build.xml Experimental script to run tests using class-level parallelism on the farm 2013-02-28 16:51:58 -05:00
intellij_example.tar.bz2 Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!) 2012-09-27 11:04:56 -04:00
ivy.xml Brought all of ReduceReads to fastutils 2013-02-23 22:53:23 -05:00