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hanna 7a13647c35 Support for specifying SAMFileReaders and SAMFileWriters as @Arguments directly. *Very* 
rough initial implementation, but should provide enough support so that people can stop
creating SAMFileWriters in reduceInit.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1332 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-07-29 16:11:45 +00:00
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org/broadinstitute/sting Support for specifying SAMFileReaders and SAMFileWriters as @Arguments directly. *Very* 2009-07-29 16:11:45 +00:00